{
  "_id": "6a1bf5081d7bb097a0a25cc4",
  "Package": "gmvjoint",
  "Type": "Package",
  "Title": "Joint Models of Survival and Multivariate Longitudinal Data",
  "Version": "0.4.5",
  "Date": "2024-10-05",
  "Authors@R": "person(\"James\", \"Murray\", email = \"james.murray@lshtm.ac.uk\", role = c(\"aut\", \"cre\"))",
  "Description": "Fit joint models of survival and multivariate longitudinal\ndata. The longitudinal data is specified by generalised linear\nmixed models. The joint models are fit via maximum likelihood\nusing an approximate expectation maximisation algorithm.\nBernhardt (2015) <doi:10.1016/j.csda.2014.11.011>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "LazyData": "true",
  "URL": "https://github.com/jamesmurray7/gmvjoint",
  "BugReports": "https://github.com/jamesmurray7/gmvjoint/issues",
  "Config/pak/sysreqs": "cmake make libicu-dev",
  "Repository": "https://jamesmurray7.r-universe.dev",
  "Date/Publication": "2024-10-05 21:00:43 UTC",
  "RemoteUrl": "https://github.com/jamesmurray7/gmvjoint",
  "RemoteRef": "HEAD",
  "RemoteSha": "541fc56b4803371957ff76a2bc1f99a2076f5905",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-31 08:38:21 UTC",
    "User": "root"
  },
  "Author": "James Murray [aut, cre]",
  "Maintainer": "James Murray <james.murray@lshtm.ac.uk>",
  "MD5sum": "a7bb95ce28f80e3dbb972bd7f81a0a97",
  "_user": "jamesmurray7",
  "_type": "src",
  "_file": "gmvjoint_0.4.5.tar.gz",
  "_fileid": "4c0944e4b07b6f1c2350583055e629e7cf889690093bb98858a3021b550b2833",
  "_filesize": 446799,
  "_sha256": "4c0944e4b07b6f1c2350583055e629e7cf889690093bb98858a3021b550b2833",
  "_created": "2026-05-31T08:38:21.000Z",
  "_published": "2026-05-31T08:44:56.639Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78712629763,
      "time": 195,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315313282"
    },
    {
      "job": 78712629761,
      "time": 202,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315313830"
    },
    {
      "job": 78712629752,
      "time": 171,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315310887"
    },
    {
      "job": 78712629755,
      "time": 170,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315310609"
    },
    {
      "job": 78712629768,
      "time": 231,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315314121"
    },
    {
      "job": 78712629764,
      "time": 322,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315324245"
    },
    {
      "job": 78712629753,
      "time": 159,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315307542"
    },
    {
      "job": 78712629732,
      "time": 296,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315321411"
    },
    {
      "job": 78712390424,
      "time": 267,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315292657"
    },
    {
      "job": 78712629721,
      "time": 138,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315307251"
    },
    {
      "job": 78712629731,
      "time": 228,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315316523"
    },
    {
      "job": 78712629739,
      "time": 174,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315311069"
    },
    {
      "job": 78712629736,
      "time": 176,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315311363"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jamesmurray7/gmvjoint",
  "_commit": {
    "id": "541fc56b4803371957ff76a2bc1f99a2076f5905",
    "author": "james murray <james.murray@lshtm.ac.uk>",
    "committer": "james murray <james.murray@lshtm.ac.uk>",
    "message": "glmmTMB changes\n",
    "time": 1728162043
  },
  "_maintainer": {
    "name": "James Murray",
    "email": "james.murray@lshtm.ac.uk",
    "login": "jamesmurray7",
    "description": "Research Fellow at LSHTM",
    "uuid": 72133932
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "glmmTMB",
      "role": "Depends"
    },
    {
      "package": "survival",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.6",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "pracma",
      "role": "Imports"
    },
    {
      "package": "reformulas",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "statmod",
      "role": "Imports"
    },
    {
      "package": "xtable",
      "role": "Imports"
    }
  ],
  "_owner": "jamesmurray7",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "glmm",
    "joint-models",
    "longitudinal",
    "mixed-models",
    "model",
    "prediction",
    "survival",
    "survival-analysis",
    "openblas",
    "cpp",
    "openmp"
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "jamesmurray7",
      "count": 274,
      "uuid": 72133932
    },
    {
      "user": "mebrooks",
      "count": 1,
      "uuid": 5310845
    }
  ],
  "_userbio": {
    "uuid": 72133932,
    "type": "user",
    "name": "james murray",
    "description": "Research Fellow at LSHTM"
  },
  "_downloads": {
    "count": 191,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gmvjoint"
  },
  "_devurl": "https://github.com/jamesmurray7/gmvjoint",
  "_searchresults": 20,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/gmvjoint.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jamesmurray7/gmvjoint",
  "_realowner": "jamesmurray7",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2022-12-07"
    },
    {
      "version": "0.2.0",
      "date": "2023-03-13"
    },
    {
      "version": "0.2.1",
      "date": "2023-03-24"
    },
    {
      "version": "0.3.0",
      "date": "2023-07-06"
    },
    {
      "version": "0.4.0",
      "date": "2023-12-21"
    },
    {
      "version": "0.4.5",
      "date": "2024-10-05"
    }
  ],
  "_exports": [
    "boot.joint",
    "cond.ranefs",
    "dynPred",
    "joint",
    "parseCoxph",
    "rgenpois",
    "ROC",
    "simData",
    "xtable.joint"
  ],
  "_datasets": [
    {
      "name": "PBC",
      "title": "Primary biliary cirrhosis data",
      "object": "PBC",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "survtime",
        "drug",
        "sex",
        "time",
        "ascites",
        "hepatomegaly",
        "spiders",
        "edema",
        "serBilir",
        "serChol",
        "albumin",
        "alkaline",
        "SGOT",
        "platelets",
        "prothrombin",
        "histologic",
        "status",
        "age"
      ],
      "rows": 1945,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "anova.joint",
      "title": "Anova for joint models",
      "topics": [
        "anova.joint"
      ]
    },
    {
      "page": "boot.joint",
      "title": "Bootstrapping a 'joint' object",
      "topics": [
        "boot.joint"
      ]
    },
    {
      "page": "cond.ranefs",
      "title": "Obtain conditional distribution of the random effects",
      "topics": [
        "cond.ranefs"
      ]
    },
    {
      "page": "dynPred",
      "title": "Dynamic predictions for survival sub-model in a multivariate joint model.",
      "topics": [
        "dynPred"
      ]
    },
    {
      "page": "extractAIC.joint",
      "title": "Extract AIC from a joint model fit.",
      "topics": [
        "extractAIC.joint"
      ]
    },
    {
      "page": "fitted.joint",
      "title": "Obtain joint model fitted values",
      "topics": [
        "fitted.joint"
      ]
    },
    {
      "page": "fixef.joint",
      "title": "Extract fixed effects from a 'joint' object.",
      "topics": [
        "fixef.joint"
      ]
    },
    {
      "page": "gmvjoint-package",
      "title": "Joint Models of Survival and Multivariate Longitudinal Data",
      "topics": [
        "gmvjoint-package",
        "gmvjoint"
      ]
    },
    {
      "page": "joint",
      "title": "Fit a joint model to time-to-event and multivariate longitudinal data",
      "topics": [
        "joint"
      ]
    },
    {
      "page": "joint.object",
      "title": "Fitted 'joint' object",
      "topics": [
        "joint.object"
      ]
    },
    {
      "page": "logLik.joint",
      "title": "Log-likelihood for joint model.",
      "topics": [
        "logLik.joint"
      ]
    },
    {
      "page": "parseCoxph",
      "title": "Parsing the survival formula and constructing all survival-related data objects.",
      "topics": [
        "parseCoxph"
      ]
    },
    {
      "page": "PBC",
      "title": "Primary biliary cirrhosis data",
      "topics": [
        "PBC"
      ]
    },
    {
      "page": "plot.residuals.joint",
      "title": "Plot joint model residuals",
      "topics": [
        "plot.residuals.joint"
      ]
    },
    {
      "page": "ranef.joint",
      "title": "Extract random effects from a 'joint' object.",
      "topics": [
        "ranef.joint"
      ]
    },
    {
      "page": "residuals.joint",
      "title": "Obtain joint model residuals",
      "topics": [
        "residuals.joint"
      ]
    },
    {
      "page": "rgenpois",
      "title": "Simulate realisations from a generalised poisson distribution",
      "topics": [
        "rgenpois"
      ]
    },
    {
      "page": "ROC",
      "title": "Receiver Operator Characteristics (ROC) for a 'joint' model.",
      "topics": [
        "ROC"
      ]
    },
    {
      "page": "simData",
      "title": "Simulate data from a multivariate joint model",
      "topics": [
        "simData"
      ]
    },
    {
      "page": "summary.joint",
      "title": "Summary of an 'joint' object.",
      "topics": [
        "summary.joint"
      ]
    },
    {
      "page": "vcov.joint",
      "title": "Extract the variance-covariance matrix from a 'joint' fit.",
      "topics": [
        "vcov.joint"
      ]
    },
    {
      "page": "xtable.joint",
      "title": "Print an LaTeX-ready 'xtable' for a 'joint' object.",
      "topics": [
        "xtable.joint"
      ]
    }
  ],
  "_readme": "https://github.com/jamesmurray7/gmvjoint/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "boot",
    "broom",
    "cli",
    "colorspace",
    "cowplot",
    "cpp11",
    "Deriv",
    "doBy",
    "dplyr",
    "farver",
    "forecast",
    "fracdiff",
    "generics",
    "ggplot2",
    "glmmTMB",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "lme4",
    "lmtest",
    "magrittr",
    "MASS",
    "Matrix",
    "mgcv",
    "microbenchmark",
    "minqa",
    "modelr",
    "mvtnorm",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "pbkrtest",
    "pillar",
    "pkgconfig",
    "pracma",
    "purrr",
    "R6",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rlang",
    "S7",
    "sandwich",
    "scales",
    "statmod",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timeDate",
    "TMB",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xtable",
    "zoo"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 3.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "gmvjoint",
  "_universes": [
    "jamesmurray7"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.5",
      "date": "2026-05-31T08:41:24.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "bdc1e11b061feb75d934d7028ceac083771ebd8a11bc92c29f5a587478778dc3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.5",
      "date": "2026-05-31T08:41:21.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "e7cd8533513e633ab3df7c3638e062792bc7c00cb7b24a85943a782a3b1bcde7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.4.5",
      "date": "2026-05-31T08:41:03.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "e1d26c466e89f30bad75cabd6d81e6640a46ca1fc5a27991b8784c0500977cc6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.4.5",
      "date": "2026-05-31T08:41:03.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "54d03c960f326794048b86cd65da64cf364671f37c2247847ad9695c7396e915",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.4.5",
      "date": "2026-05-31T08:41:42.000Z",
      "arch": "aarch64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "bf03bceb67187ac13128ae305feb34756c6e0077630d3a7b7279741cdee34fc7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.4.5",
      "date": "2026-05-31T08:42:35.000Z",
      "arch": "x86_64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "69426ae0a24391b540d4c450f3cc1ecbc17c05e7b00b1bc5aa39a5c96b8f9710",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.4.5",
      "date": "2026-05-31T08:40:53.000Z",
      "arch": "aarch64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "12966968ddbfcc2f751b618d0217faf352247e240d7c88aa251990e088a34944",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.4.5",
      "date": "2026-05-31T08:42:10.000Z",
      "arch": "x86_64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "f3349fd427eb92c5cd093ee709a49a5c9735ef37ec7b55fa8e5611f76a317851",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.4.5",
      "date": "2026-05-31T08:41:12.000Z",
      "arch": "emscripten",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "27f02c86946359f8ce11780d0ff034643fda60d647e23ad5a5db0986f9e5ee77",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.4.5",
      "date": "2026-05-31T08:41:16.000Z",
      "arch": "x86_64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "d6110d41a4dc3c629f94e633075c8ce314d8f58ada44b17a14a5acd6da60f9e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.4.5",
      "date": "2026-05-31T08:40:37.000Z",
      "arch": "x86_64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "aaf86af33a8a97d3af47e94a2ca049c2f318fb9da599e76edc5ecdc85f326999",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.4.5",
      "date": "2026-05-31T08:40:23.000Z",
      "arch": "x86_64",
      "commit": "541fc56b4803371957ff76a2bc1f99a2076f5905",
      "fileid": "bd3439fac43c8e39268e958f13ecb83c4e82ef576a9f8f1d9d7c951405dd7751",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jamesmurray7/actions/runs/26707833944"
    }
  ]
}